Scilight Press

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Received: 30 Jul 2026 | Revised: 03 Aug 2026 | Accepted: 11 Aug 2026 | Published: 11 Aug 2026

References 

• 1.

  Shen, R.M.; Yan, X.Y.; Zhang, G.L.; et al. Current Status and Strategic Thinking of Soil Science Development in China in the new Era. Acta Pedol. Sin. 2020, 57, 1051–1059.

• 2.

  Khoiri, A.N; Loganathan, K.; Kusonmano, K.; et al. Inoculation with a rhizobacteria synthetic community enhances sugarcane stress resilience through targeted modulation of plant-microbe interactions. Rhizosphere 2025, 35, 101142.

• 3.

  Chauhan, P.S.; Nautiyal, C.S. Smart microbiomes for shaping rhizosphere function and plant-microbe interactions. Rhizosphere 2026, 38, 101314.

• 4.

  Woo, S.L.; Hermosa, R.; Lorito, M.; et al. Microbiome-mediated rhizosphere engineering for the alleviation of drought stress: A promising strategy for agricultural sustainability. Rhizosphere 2025, 36, 101201.

• 5.

  Müller, D.B.; Vogel, C.; Bai, Y.; et al. The plant microbiota: Composition and function. Annu. Rev. Plant Biol. 2016, 50, 211–234.

• 6.

  Shao, H.-B.; Chu, L.-Y.; Lu, H.-Y.; et al. Towards sustainable agriculture for the salt-affected soil. Land. Degrad. Dev. 2019, 30, 574–579.

• 7.

  Mukherjee, P.K.; Horwitz, B.A.; Herrera-Estrella, A.; et al. Trichoderma research in the genome era. Annu. Rev. Phytopathol. 2013, 51, 105–129.

• 8.

  Nicole, M.D.; Harro, J.B. Metabolomics in the rhizosphere: Tapping into belowground chemical communication. Trends Plant Sci. 2016, 21, 256–265.

• 9.

  Shao, H.-B. (Ed.) Salt marshes: Ecosystem. In Vegetation and Restoration Strategies; Nova Science Publishers: New York, NY, USA, 2014; pp. 1–29.

• 10.

  Shao, H.-B. (Ed.) Marshy Salt-Soil Improvement and Development: Theory and Practices; Nova Science Publishers: New York, NY, USA, 2017; Volume 1, pp. 1–54.

• 11.

  Long, X.H.; Liu, L.P.; Shao, H.B.; et al. Developing and sustainably utilizing the coastal mudflat areas in China. Sci. Total Environ. 2016, 569–570, 1077–1086.

• 12.

  Tang, B.; Man, J.; Anika, L.Arbuscular mycorrhizal fungi benefit plants in response to major global change factors. Ecol. Lett. 2023, 26, 1867–1886.

• 13.

  Tao, F.; Huang, Y.-Y.; Hungate, B.A.; et al. Microbial carbon use efficiency promotes global soil carbon storage. Nature 2023, 618, 981–985.

• 14.

  Verslus, P.; et al. Burning questions for a warming and changing world:15 unknowns in plant abiotic stress. Plant Cell 2023, 35, 67–108.

• 15.

  You, L.-C.; Ros, G.H.; Chen, Y.L.; et al. Global mean nitrogen recovery efficiency in croplands can be enhanced by optical nutrient, crop and soil management practices. Nat. Commun. 2023, 14, 5146.

• 16.

  Morales Moreira, Z.P.; Chen, M.-Y.; Yanez Ortuno, D.L.; et al. Engineering plant mirobiomes by integrating eco-evolutionary principles into current strategies. Curr. Opin. Plant Biol. 2023, 71, 102316.

• 17.

  Zhang, Q.M.; Ha, T.; Prishchepov, A.V.; et al. The neglected role of abandoned cropland in supporting both food security and climate change mitigation. Nat. Commun. 2023, 14, 5279.

• 18.

  Zhao, C.Z.; Zhang, H.M.; Song, C.P.; et al. Mechanisms of plant responses and adaptation to soil salinity. Innovation 2020, 100017, 100017.

• 19.

  Zhang, H.; Zhu, J.; Gong, Z.J.-K.Abiotic stress responses in plants. Nat. Rev. 2022, 23, 104–119.

• 20.

  Liu, T.; Xu, L.G.; Duan, C.G. The trans-kingdom communication of noncoding RNAs in plant-environment interactions. Plant Genome 2022, 16, 20289.

• 21.

  Bender, S.F.; vander Heijden, M.G.A.; Watson, C.J.; et al. Simplification of soil biota communities impairs nutrient recycling and enhances above-and below-ground nitrogen losses. New Phytol. 2023, 240, 788–806.

• 22.

  Shi, J.-C.; Wang, X.-L.; Wang, E.-T. Mycorrhizal symbiosis in plant growth and stress adaptation: From genes to ecosystems. Ann. Rev. Plant Biol. 2023, 74, 123–149.

• 23.

  Hayley, M.B.; Willian, S.; Christopher, M.R. Single-cell proteomics enabled by next-generation sequencing or mass spectrometry. Nat. Methods 2023, 20, 363–374.

• 24.

  Laurent, P.; Claire, C.; Andreas, K.; et al. The interplay between microbial communities and soil properties. Nature Rev. Microbiol. 2023, 21, 567–579.

• 25.

  Liu, Q.; Cheng, L.; Nian, H.; et al. Linking plant functional genes to rhizosphere microbes: A review. Plant Biotech. J. 2023, 21, 1245–1258.

• 26.

  Maier, L. Pioneering microbiome engineering. Nat. Rev. Microbiol. 2023, 21, 630.

• 27.

  Gfeller, V.; Waelchi, J.; Pfister, S.; et al. Plant secondary metabolite-dependent plant-soil feedback can improve crop yield in the field. eLife 2023, 12, e84988.

• 28.

  Wu, D.; Wamg, W.-X.; Yao, Y.-P.; et al. Microbial interactions within beneficial consortia promote soil health. Sci. Total Environ. 2023, 908, 165801.

• 29.

  Bai, B.; Liu, W.; Qiu, X.; et al. The root microbiome: Community assembly and its contributions to plant fitness. J. Integr. Plant Biol. 2022, 64, 230–243.

• 30.

  Huttenhower, C.; Finn, R.D.; McHardy, A.C. Challenges and opportunities in sharing microbime data and analyses. Nat. Microbiol. 2023, 8, 15, 45–1552.

• 31.

  Chen, X.-L.; Taylor, A.R.; Reich, P.B.; et al. Tree diversity increases decadal forest soil carbon and nitrogen accrual. Nature 2023, 623, 276–282.

• 32.

  Kulkarni, O.S.; Mazumder, M.; Kini, S.; et al. Volatile methyljasmonate from roots triggers host-beneficial soil microbiome biofilms. Nat. Chem. Biol. 2023, 19, 756–772.

• 33.

  Jansson, J.K.; McClure, R.; Egbert, R.G. Soil microbiome engineering for sustainability in a changing environment. Nat. Biotech. 2023, 41, 1734–1740.

• 34.

  Abdelfsttah, A. From seed to seed; the role of microbial inheritance in the assembly of the plant microbiome. Trends Microbiol. 2022, 30, 764–772.

• 35.

  Li, P.-F.; Tedersoo, L.; Crowther, T.W.; et al. Fossil-fuel-dependent scenarios could lead to a significant decline of global plant-beneficial bacteria abundance in soils by 2100. Nat. Food 2023, 4, 996–1006.

• 36.

  Zhu, Y.-Y.; Yang, Z.; Liu, J.-G.; et al. Crop rotation and native microbiome inoculation restore soil capacity to suppress a root disease. Nat. Commun. 2023, 14, 8798–8811.

• 37.

  Shi, W.Y.; Shao, H.B.; Li, H.S. Progress in the remediation of hazardous heavy metal-polluted soils by natural zeolite. J. Hazard. Mater. 2009, 170, 1–6.

• 38.

  Zhu, M.Y.; Che-Wei; Hsu, L.L.; et al. Single-cell transcriptomics reveal how root tissues adapt to soil stress. Nature 2025, 642, 721–729.

• 39.

  Usländer, A.; Haag, M.V.; Cheng, A.P.; et al. Cross-kingdom RNA interference promotes arbuscular mycorrhiza development. Nat. Plants 2026, 11, 325–345.

• 40.

  Qiao, L.; Sun, H.; Tang, J.; et al. Nannodomain-localized formin gates symbiotic microbial entry in legume and solanaceous plants. Science 2026, 6789, 1036–1045.

• 41.

  Zhang, J.; Liu, Z.Y.; Edward, J. Farrar; et al. Ethylene modulates cell wall mechanics for root responses to soil compaction. Nature 2026, 649, 685–692.

• 42.

  Chen, Y.; Wilshut, R.A.; Gaobeva, P. The legacy of soil chemistry: A hidden manipulator driving plant-soil feedbacks. Trend Microbiol. 2026, 34, 723–734.

• 43.

  Lugtenberg, B.; Kamilova, F. Plant growth-promoting rhizobacteria. Annu. Rev. Microbiol. 2021, 75, 541–561.

• 44.

  Contreras-Cornejo, H.A.; Macías-Rodríguez, L.; Cortés-Penagos, C.; et al. Trichoderma virens promotes plant growth via auxin production. Mol. Plant–Microbe Interact. 2009, 22, 425–434. https://doi.org/10.1094/MPMI-22-4-0425.

• 45.

  Backer, R.; Rokem, J.S.; Ilangumaran, G.; et al. Plant growth-promoting rhizobacteria: Context, mechanisms of action, and roadmap to commercialization of biostimulants for sustainable agriculture. Front. Plant Sci. 2022, 13, 709948.